{ "_id": "6ac652d6f511ae58c09aa1c5", "Package": "RegCalib", "Title": "Regression Calibration for Measurement Error Correction", "Version": "0.1.0", "Authors@R": "c(\nperson(\ngiven = \"Jingyu\",\nfamily = \"Cui\",\nemail = \"jingyu.cui@yale.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(\nAffiliation = \"Department of Biostatistics, Yale School of Public Health\",\nORCID = \"0000-0002-8073-1422\"\n)\n),\nperson(\ngiven = \"Wenze\",\nfamily = \"Tang\",\nemail = \"wenzet@gmail.com\",\nrole = \"aut\",\ncomment = c(\nAffiliation = \"Vertex Pharmaceuticals\"\n)\n),\nperson(\ngiven = \"Molin\",\nfamily = \"Wang\",\nemail = \"stmow@channing.harvard.edu\",\nrole = \"aut\",\ncomment = c(\nAffiliation = \"Department of Biostatistics, Department of Epidemiology, Harvard T.H. Chan School of Public Health\"\n)\n)\n)", "Description": "Corrects for measurement error in continuous exposures and\ncovariates using regression calibration methods. Provides\ncorrected coefficients, standard errors, p-values, confidence\nintervals, and variance-covariance matrices for linear and\ngeneralized linear outcome models under an external validation\nstudy design. Implements the deattenuation factor method\n(RegCalibDF) and the substitution approach (RegCalibSub).\nSupports single and multiple error-prone exposures.", "License": "GPL-3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Config/testthat/edition": "3", "URL": "https://github.com/JingyuCui639/RegCalib", "Config/roxygen2/version": "8.0.0", "LazyData": "true", "VignetteBuilder": "knitr", "BugReports": "https://github.com/JingyuCui639/RegCalib/issues", "LazyDataCompression": "xz", "Repository": "https://jingyucui639.r-universe.dev", "Date/Publication": "2026-07-31 02:14:36 UTC", "RemoteUrl": "https://github.com/jingyucui639/regcalib", "RemoteRef": "HEAD", "RemoteSha": "a179265ffd20245f6d92aa5cd96409d9c058ead9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-07 11:45:17 UTC", "User": "root" }, "Author": "Jingyu Cui [aut, cre] (Affiliation: Department of Biostatistics, Yale\nSchool of Public Health, ORCID:\n),\nWenze Tang [aut] (Affiliation: Vertex Pharmaceuticals),\nMolin Wang [aut] (Affiliation: Department of Biostatistics, Department\nof Epidemiology, Harvard T.H. Chan School of Public Health)", "Maintainer": "Jingyu Cui ", "_user": "jingyucui639", "_type": "src", "_file": "RegCalib_0.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/98f50fc08a33b25bf3054dc5547d77c6c77627fec85cb619aa24c00d25477f35", "_filesize": 1102073, "_sha256": "98f50fc08a33b25bf3054dc5547d77c6c77627fec85cb619aa24c00d25477f35", "_expires": "2027-01-15T14:10:28.000Z", "_created": "2026-10-07T11:45:17.000Z", "_published": "2026-10-07T14:10:30.391Z", "_buildurl": "https://github.com/r-universe/jingyucui639/actions/runs/37615897596", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 112775211620, "time": 159, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11479986232" }, { "job": 112775211701, "time": 157, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11480690919" }, { "job": 112775211632, "time": 223, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11487238622" }, { "job": 112775211690, "time": 184, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11487278898" }, { "job": 112774144527, "time": 164, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11480545239" }, { "job": 112775211633, "time": 88, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11480985218" }, { "job": 112775211576, "time": 87, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11480780655" }, { "job": 112775211583, "time": 69, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11479980949" }, { "job": 112775211492, "time": 83, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11480970271" } ], "_upstream": "https://github.com/jingyucui639/regcalib", "_commit": { "id": "a179265ffd20245f6d92aa5cd96409d9c058ead9", "author": "Jingyu Cui ", "committer": "Jingyu Cui ", "message": "all files update\n", "time": 1785464076 }, "_maintainer": { "name": "Jingyu Cui", "email": "jingyu.cui@yale.edu", "orcid": "0000-0002-8073-1422" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "matrixcalc", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "jingyucui639", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-24", "n": 12 }, { "week": "2026-25", "n": 2 }, { "week": "2026-31", "n": 6 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "jingyucui639", "count": 22, "uuid": 55002743 } ], "_userbio": { "uuid": 55002743, "type": "user", "name": "Jingyu Cui", "followers": 0 }, "_downloads": { "count": 254, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/RegCalib" }, "_devurl": "https://github.com/jingyucui639/regcalib", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/RegCalib.html" ], "_homeurl": "https://github.com/jingyucui639/regcalib", "_realowner": "jingyucui639", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2026-08-07" } ], "_exports": [ "RegCalibDF", "RegCalibSub" ], "_datasets": [ { "name": "main_data_sim", "title": "Simulated Main-Study Data", "object": "main_data_sim", "class": [ "data.frame" ], "fields": [ "id", "fqcal", "fqcalinc", "fqtfat", "fqtfatinc", "fqalc", "fqalcinc", "age", "agec", "case" ], "rows": 89538, "table": true, "tojson": true }, { "name": "valid_data_sim", "title": "Simulated External Validation Data", "object": "valid_data_sim", "class": [ "data.frame" ], "fields": [ "id", "fqcal", "fqcalinc", "fqtfat", "fqtfatinc", "fqalc", "fqalcinc", "drcal", "drcalinc", "drtfat", "drtfatinc", "dralc", "dralcinc", "age", "agec" ], "rows": 173, "table": true, "tojson": true } ], "_help": [ { "page": "main_data_sim", "title": "Simulated Main-Study Data", "topics": [ "main_data_sim" ] }, { "page": "RegCalibDF", "title": "Regression Calibration Using the Deattenuation Factor Method", "topics": [ "RegCalibDF" ] }, { "page": "RegCalibSub", "title": "Regression Calibration Using Substitution Method", "topics": [ "RegCalibSub" ] }, { "page": "valid_data_sim", "title": "Simulated External Validation Data", "topics": [ "valid_data_sim" ] } ], "_readme": "https://github.com/jingyucui639/regcalib/raw/HEAD/README.md", "_rundeps": [ "cli", "dplyr", "generics", "glue", "lattice", "lifecycle", "magrittr", "Matrix", "matrixcalc", "pillar", "pkgconfig", "R6", "rlang", "tibble", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "external-validation.Rmd", "filename": "external-validation.html", "title": "Regression Calibration with an External Validation Study", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Load the package and example data", "Deattenuation factor method", "Substitution method", "Access the corrected variance-covariance matrices" ], "created": "2026-07-31 02:14:36", "modified": "2026-07-31 02:14:36", "commits": 1 } ], "_score": 4.176091259055681, "_indexed": true, "_nocasepkg": "regcalib", "_universes": [ "jingyucui639" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.0", "date": "2026-10-07T11:47:52.000Z", "distro": "resolute", "commit": "a179265ffd20245f6d92aa5cd96409d9c058ead9", "fileid": "https://r2.ropensci.org/3a4f2e4234108181a460d47633bcfe522730ebd5e3446cc0a02d9d47c103abff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jingyucui639/actions/runs/37615897596" }, { "r": "4.6.1", "os": "linux", "version": "0.1.0", "date": "2026-10-07T11:47:51.000Z", "distro": "resolute", "commit": "a179265ffd20245f6d92aa5cd96409d9c058ead9", "fileid": "https://r2.ropensci.org/e8fabb9b95e8b650de74573279acf79872a65b0c4b9f0cbccc62f46531d680ab", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jingyucui639/actions/runs/37615897596" }, { "r": "4.5.3", "os": "mac", "version": "0.1.0", "date": "2026-10-07T14:07:00.000Z", "commit": "a179265ffd20245f6d92aa5cd96409d9c058ead9", "fileid": "https://r2.ropensci.org/cd6e387954fd215e943f911abd4e17646b074e22b985b366d55d1a3ea115db48", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jingyucui639/actions/runs/37615897596" }, { "r": "4.6.1", "os": "mac", "version": "0.1.0", "date": "2026-10-07T14:08:49.000Z", "commit": "a179265ffd20245f6d92aa5cd96409d9c058ead9", "fileid": "https://r2.ropensci.org/5c38497c032901fe9e54276b644cb74958b919668784b388c031730b54559419", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jingyucui639/actions/runs/37615897596" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.0", "date": "2026-10-07T11:47:03.000Z", "commit": "a179265ffd20245f6d92aa5cd96409d9c058ead9", "fileid": "https://r2.ropensci.org/19b1cdb871c3524d92f44b612a5f280d23527fa2ad41e28fc05cc77ce2fe5265", "status": "success", "buildurl": "https://github.com/r-universe/jingyucui639/actions/runs/37615897596" }, { "r": "4.7.0", "os": "win", "version": "0.1.0", "date": "2026-10-07T11:46:41.000Z", "commit": "a179265ffd20245f6d92aa5cd96409d9c058ead9", "fileid": "https://r2.ropensci.org/833c455fc63967c0a86f09fa0d5daec332bf27eb491f1256dbf89b34b1606feb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jingyucui639/actions/runs/37615897596" }, { "r": "4.5.3", "os": "win", "version": "0.1.0", "date": "2026-10-07T11:46:18.000Z", "commit": "a179265ffd20245f6d92aa5cd96409d9c058ead9", "fileid": "https://r2.ropensci.org/d9a64c318a6a368491ebaf4d1879355de2dcc92adbe8dde1d8a7d85e30477054", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jingyucui639/actions/runs/37615897596" }, { "r": "4.6.1", "os": "win", "version": "0.1.0", "date": "2026-10-07T11:46:34.000Z", "commit": "a179265ffd20245f6d92aa5cd96409d9c058ead9", "fileid": "https://r2.ropensci.org/a293634eae2d379511d1665f8fffa68d3d6406f82a339d610dc0f06467f4ae14", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jingyucui639/actions/runs/37615897596" } ] }